J. Rückelt, V. Sauerland, T. Slawig, A. Srivastav, B. Ward, and C. Patvardhan. Parameter optimization and uncertainty analysis in a model of oceanic co2 uptake using a hybrid algorithm and algorithmic differentiation. Nonlinear Analysis: Real World Applications, 11(5):3993-4009, 2010. [ DOI | http ]
M.A.M. Friedrichs, J.A. Dusenberry, L.A. Anderson, R.A. Armstrong, F. Chai, J.R. Christian, S.C. Doney, J. Dunne, M. Fujii, R. Hood, D.J. Mcgillicuddy, J.K. Moore, M. Schartau, Y.H. Spitz, and J.D. Wiggert. Assessment of skill and portability in regional marine biogeochemical models: Role of multiple planktonic groups. J. Geophys. Res.-Oceans, 112(C8), 2007. [ DOI ]
J.F. Tjiputra, D. Polzin, and A.M.E. Winguth. Assimilation of seasonal chlorophyll and nutrient data into an adjoint three-dimensional ocean carbon cycle model: Sensitivity analysis and ecosystem parameter optimization. Global Biogeochemical Cycles, 21(1), 2007. [ DOI | .pdf ]
S. Dutkiewicz, M.J. Follows, P. Heimbach, and J. Marshall. Controls on ocean productivity and air-sea carbon flux: An adjoint model sensitivity study. Geophysical Research Letters, 33(16):doi:10.1029/2005GL024987, 2006. [ http | .pdf ]
X.W. Li, D.J. Mcgillicuddy, E.G. Durbin, and P.H. Wiebe. Biological control of the vernal population increase of calanus finmarchicus on georges bank. Deep-Sea Res. Part II-Top. Stud. Oceanogr., 53(23-24):2632-2655, 2006.
Uses the TAMC-generated adjoint of the marine biogeochemistry model described in Mcgillicuddy et al. (1998).
C. Hill, V. Bugnion, M. Follows, and J. Marshall. Evaluating carbon sequestration efficiency in an ocean circulation model by adjoint sensitivity analysis. J. Geophys. Res., 109(C11005):doi:10.1029/2002JC001598, 2004. [ http | .pdf ]
DJ McGillicuddy and A. Bucklin. Intermingling of two Pseudocalanus species on Georges Bank. Journal of Marine Research, 60(4):583-604, 2002. [ http ]
Uses the TAMC-generated adjoint of the marine biogeochemistry model described in Mcgillicuddy et al. (1998).
K. Fennel, M. Losch, J. Schröter, and M. Wenzel. Testing a marine ecosystem model: Sensitivity analysis and parameter optimization. Journal of Marine Systems, 28:45-63, 2001.
TAMC is used to generate the model's adjoint and Hessian code
A.M.E. Winguth, D. Archer, E. Maier-Reimer, and U. Mikolajewicz. Paleonutrient data analysis of the glacial Atlantic using an adjoint ocean general circulation model. In P. Kasibhatla, M. Heimann, D. Hartley, P. J. Rayner, N. Mahowald, and R. Prinn, editors, Inverse Methods in Global Biogeochemical Cycles, Geophys. Monogr. Ser., volume 114, pages 171-183. American Geophysical Union, Washington, D. C., 1999.
DJ Mcgillicuddy Jr, DR Lynch, AM Moore, WC Gentleman, CS Davis, and CJ Meise. An adjoint data assimilation approach to diagnosis of physical and biological controls on Pseudocalanus spp. in the Gulf of Maine-Georges Bank region. Fisheries Oceanography, 7(3-4):205-218, 1998. [ DOI ]